We propose a new strategy, hereafter referred to as TE-GWAS, that endeavours to identify agronomic traits controlled by TEs through association studies of TEASVs with phenotypes. One major advantage of this new strategy is that it should allow one to directly identify the genetic factor that control the trait of interest as the TE insertions used as marker are expected to modify gene expression and thus be causative of the phenotypic change. Rice is a major crop species worldwide and is a staple food for the lowest income populations. Recently, the availability of the genome sequence of 3000 rice varieties has opened new perspectives in large scale genomic studies for this crop, such as the one we propose in this post-doctoral project.
This project should deliver new genetic factors enabling rice cultivation in poor soils, a particularly important challenge for securing food production in poorest areas.
Project Number : 1502-505
Year : 2017
Type of funding : AAP
Project type : AAP MOBILITE
Start date :
01 Jun 2018
End date :
31 Dec 2019
Flagship project :
Non
Project leader :
Olivier Panaud
Project leader's institution :
UPVD
Project leader's RU :
LGDP
Budget allocated :
76660 €
Total budget allocated ( including co-financing) :
76660 €
Funding :
Labex